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Output Folder Structure

HiSeq 2500 System User Guide

123

Output Folder Structure

Config—Configuration settings for the run.

Data

Intensities

BaseCalls

L00[X]—Base call files for each lane, aggregated in 1 file per cycle.

Phasing—Empirical phasing files, 1 file per tile at every cycle.

L00[X]—Aggregated cluster location files for each lane.

Offsets—Two offsets file for the run.

RTAConfiguration.xml

Images

Focus

L00[X]—Focus images for each lane.

InterOp—Binary files used by Sequencing Analysis Viewer.

Logs—Log files describing operational events.

Recipe—Run-specific recipe file named with reagent cartridge ID.

RTALogs—Log files describing Real-Time Analysis events.

Thumbnail_Images—Thumbnail images of 9 locations from each tile, generated for

each cycle and base.

RunInfo.xml

RunParameters.xml

Run Folder Name and Path

The run folder is the root folder for output from a sequencing run. During run setup, the

software prompts you to enter the path for the run folder. By default, the folder is named in

the following format:

YYMMDD_<Computer Name>_<Run Number>_<Flow Cell ID>

Example: 110114_SN106_0716_A90095ACXX

The run number increments by 1 each time you perform a run on the instrument. The flow

cell ID entered during the run setup steps appends to the run folder name.

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Directed Electronics equalizer 2500 Betriebsanweisung Seite 133