
HiSeq 2500 Software
HiSeq 2500 System User Guide
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} Wash—Select Wash to initiate an instrument water wash or maintenance wash.
Figure 6 Wash Command Options
• Water Wash—The water wash flushes water through the system. This wash is
required after a sequencing run or after the instrument has been idle for 1 day or
more. See Perform a Water Wash on page 104.
• Maintenance Wash—The maintenance wash flushes Tween 20 and ProClin 300
through the system. This wash is required before switching modes or every 10
days, and is a recommended option after a high output run. See Perform a
Maintenance Wash on page 100.
} Check—Select Check to open the fluidics check screen and confirm proper flow during
instrument installation or fluidics troubleshooting.
} Mode Select—Select Mode Select to change run modes. Run modes include TruSeq v3,
HiSeq v4, and RapidRun.
Activity and Sensor Indicators
The Welcome screen contains a series of icons in the lower-right corner of the screen that
indicate instrument activity and status of specific components based on instrument
sensors.
Figure 7 Activity Indicators
From left to right, activity indicators represent the X, Y, and Z motors, electronics
functionality, the camera, the fluidics system, and processing functions.
Figure 8 Sensor Indicators
From left to right, sensor indicators represent flow cell A temperature, reagent chiller
temperature, BaseSpace cloud status, and flow cell B temperature.
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